Information Processing and Living Systems

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Table of Contents

Ch. 1 A multi-disciplinary survey of biocomputing : 1. molecular and cellular levels 1
Ch. 2 A multi-disciplinary survey of biocomputing : 2. systems and evolutionary levels, and technological applications 141
Ch. 3 Models for complex eukaryotic regulatory DNA sequences 575
Ch. 4 An algorithm for Ab Initio DNA motif detection 611
Ch. 5 Detecting molecular evidence of positive Darwinian selection 615
Ch. 6 Molecular phylogenetic analysis : understanding genome evolution 645
Ch. 7 Constructing biological networks of protein-protein interactions 653
Ch. 8 Computational modelling of gene regulatory networks 673
Ch. 9 Overview of text-mining in life-sciences 687
Ch. 10 Integrated prognostic profiles : combining clinical and gene expression information through evolving connectionist approach 695
Ch. 11 Databases on gene regulation 709
Ch. 12 On the search of better validation and statistical methods in microarray data analysis 729
Ch. 13 Information extraction from dynamic biological Web sources 741
Ch. 14 Computer aided design of signaling networks 751
Ch. 15 Analysis of DNA sequences : hunting for genes 761
Ch. 16 Biological databases and Web services : metrics for quality 771
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