Plant Bioinformatics: Methods and Protocols / Edition 1

Plant Bioinformatics: Methods and Protocols / Edition 1

by David Edwards
     
 

ISBN-10: 1617376973

ISBN-13: 9781617376979

Pub. Date: 11/19/2010

Publisher: Springer-Verlag New York, LLC

Bioinformatics is a rapidly developing field. Data volumes continue to grow and there is an increasing breadth of available data, including sequence, gene expression, protein, metabolite and phenotypic data. Novel databases are being developed for specific species or experiment types. These databases and tools may greatly assist in the application of plant

…  See more details below

Overview

Bioinformatics is a rapidly developing field. Data volumes continue to grow and there is an increasing breadth of available data, including sequence, gene expression, protein, metabolite and phenotypic data. Novel databases are being developed for specific species or experiment types. These databases and tools may greatly assist in the application of plant biotechnology, though they require a basic set of skills to identify and utilize the most appropriate resource.

This book aims to assist research scientists in choosing the most applicable database or bioinformatics tools to aid and promote their research in plant biotechnology. Chapters include practical examples and highlight common problems encountered in bioinformatics analysis.

Further chapters are aimed at researchers developing bioinformatics databases and tools, detailing commonly applied database formats and biology-focused scripting languages. These will provide both beginner and experienced bioinformatics researchers with the necessary skills to develop and apply bioinformatics tools for their specialist area of plant research.

Read More

Product Details

ISBN-13:
9781617376979
Publisher:
Springer-Verlag New York, LLC
Publication date:
11/19/2010
Series:
Methods in Molecular Biology Series, #406
Edition description:
Softcover reprint of hardcover 1st ed. 2007
Pages:
552
Product dimensions:
9.00(w) x 6.00(h) x 1.27(d)

Table of Contents

Plant Bioinformatics

1 The EMBL Nucleotide Sequence and Genome Reviews Databases

2 Using GenBank

3 A Collection of Plant-Specific Genomic Data and Resources at the National Center for Biotechnology Information

4 UniProtKB/Swiss-Prot, the manually annotated section of the UniProt KnowledgeBase

5 Plant Database Resources at The Institute for Genomic Research

6 MIPS Plant Genome Information Resources (PlantsDB)

7 HarvEST: an EST database-and viewing software

8 The TAIR Database

9 AtEnsembl - A post-genomic resource browser for Arabidopsis

10 Accessing integrated Brassica genetic and genomic data using the BASC server

11 Leveraging model legume information to find candidate genes for soybean Sudden Death Syndrome using the Legume Information System (LIS)

12 Legume resources: MtDB and medicago.org

13 BGI-RIS V2: Rice Information System at the Beijing Genomics Institute

14 GrainGenes: A Genomic Database for Triticeae and Avena

15 Gramene: A Resource for Comparative Grass Genomics

16 MaizeGDB: The Maize Genetics and Genomics Database

17 BarleyBase/PLEXdb: A Unified Expression Profiling Database for Plants and Plant Pathogens

18 Reaping the benefits of SAGE

19 Methods for analysis of gene expression in plants using MPSS

20 Metabolomics Data Analysis, Visualization, and Integration

21 KEGG Bioinformatics Resource for Plant Genomics Research

22 Using ICIS to Integrate Crop Phenotype Data from Different Sources

23 Automated discovery of Single Nucleotide Polymorphism (SNP) and Simple Sequence Repeat (SSR) molecular genetic markers

24 Methods for Gene Ontology Annotation

25 Gene Structure Annotation at PlantGDB

26 An Introduction to BioPerl

Read More

Customer Reviews

Average Review:

Write a Review

and post it to your social network

     

Most Helpful Customer Reviews

See all customer reviews >