Understanding Bioinformatics / Edition 1

Understanding Bioinformatics / Edition 1

ISBN-10:
0815340249
ISBN-13:
9780815340249
Pub. Date:
09/06/2007
Publisher:
Taylor & Francis
ISBN-10:
0815340249
ISBN-13:
9780815340249
Pub. Date:
09/06/2007
Publisher:
Taylor & Francis
Understanding Bioinformatics / Edition 1

Understanding Bioinformatics / Edition 1

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Overview

Suitable for advanced undergraduates and postgraduates, Understanding Bioinformatics provides a definitive guide to this vibrant and evolving discipline. The book takes a conceptual approach. It guides the reader from first principles through to an understanding of the computational techniques and the key algorithms. Understanding Bioinformatics is an invaluable companion for students from their first encounter with the subject through to more advanced studies.

The book is divided into seven parts, with the opening part introducing the basics of nucleic acids, proteins and databases. Subsequent parts are divided into 'Applications' and 'Theory' Chapters, allowing readers to focus their attention effectively. In each section, the Applications Chapter provides a fast and straightforward route to understanding the main concepts and 'getting started'. Each of these is then followed by Theory Chapters which give greater detail and present the underlying mathematics. In Part 2, Sequence Alignments, the Applications Chapter shows the reader how to get started on producing and analyzing sequence alignments, and using sequences for database searching, while the next two chapters look closely at the more advanced techniques and the mathematical algorithms involved. Part 3 covers evolutionary processes and shows how bioinformatics can be used to help build phylogenetic trees. Part 4 looks at the characteristics of whole genomes. In Parts 5 and 6 the focus turns to secondary and tertiary structure – predicting structural conformation and analysing structure-function relationships. The last part surveys methods of analyzing data from a set of genes or proteins of an organism and is rounded off with an overview of systems biology.

The writing style of Understanding Bioinformatics is notable for its clarity, while the extensive, full-color artwork has been designed to present the key concepts with simplicity and consistency. Each chapter uses mind-maps and flow diagrams to give an overview of the conceptual links within each topic.


Product Details

ISBN-13: 9780815340249
Publisher: Taylor & Francis
Publication date: 09/06/2007
Edition description: Illustrated
Pages: 800
Product dimensions: 8.62(w) x 10.88(h) x (d)

About the Author

Marketa Zvelebil is the team leader of cancer informatics at The Breakthrough Toby Robins Breast Cancer Research Centre.

Jeremy O. Baum is an Honorary Teaching Fellow in the School of Crystallography, Birkbeck College.

Table of Contents

Part 1: Background Basics
1. The Nucleic Acid World
2. Protein Structure
3. Dealing with Databases

Part 2: Sequence Alignments
4. Producing and Analyzing Sequence Alignments
5. Pairwise Sequence Alignment and Database Searching
6. Patterns, Profiles, and Multiple Alignments

Part 3: Evolutionary Processes
7. Recovering Evolutionary History
8. Building Phylogenetic Trees

Part 4: Genome Characteristics
9. Revealing Genome Features
10. Gene Detection and Genome Annotation

Part 5: Secondary Structures
11. Obtaining Secondary Structure from Sequence
12. Predicting Secondary Structures

Part 6: Tertiary Structures
13. Modeling Protein Structure
14. Analyzing Structure-Function Relationships

Part 7: Cells and Organisms
15. Proteome and Gene Expression Analysis
16. Clustering Methods and Statistics
17. Systems Biology

Appendices: Background Theory

Appendix A. Probability, Information, and Bayesian Analysis
Appendix B. Molecular Energy Functions
Appendix C. Function Optimization

What People are Saying About This

From the Publisher

'Congratulations on a fine book! I do not think I have seen such a comprehensive text on bioinformatics algorithms and techniques before. I think this will be an invaluable resource for the bioinformatics community and researchers of neighbouring disciplines.' - Jaap Heringa, Free University, Amsterdam

'This is very well done. Compared to other competing textbooks, your book will be probably the first one that explains gene finding in detail.' - Sun Kim, Indiana University, Bloomington, USA

‘…provides an outstanding introduction to the main bioinformatics problems and tools, well-balanced between applications to biological problems and theory behind data processing methods… an excellent and updated book for students of Bioinformatics’ Computer Methods and Programs in Biomedicine

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