- Praeludium for organ in C major, BuxWV 136
- Chorale prelude for organ in C major, BuxWV 190, "Gott der Vater wohn uns bei"
- Chorale prelude for organ in G minor, BuxWV 198, "Jesus Christus, unser Heiland"
- Trio Sonata for organ No. 6 in G major, BWV 530 (BC J6)
- Wir glauben all an einen Gott (IV), chorale prelude for organ (by J. L. Krebs, not JSB), BWV 740
- Toccata and Fugue, for organ in D minor ("Dorian"), BWV 538 (BC J38)
- Pieces (3), for organ, M. 35-37: Fantaisie in A
- Prelude on "Land of Rest", for organ
- Variations on an Old Noël, for organ, Op. 20