RNA Structure Determination: Methods and Protocols

RNA Structure Determination: Methods and Protocols

Paperback(Softcover reprint of the original 1st ed. 2016)

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Product Details

ISBN-13: 9781493981984
Publisher: Springer New York
Publication date: 06/27/2018
Series: Methods in Molecular Biology , #1490
Edition description: Softcover reprint of the original 1st ed. 2016
Pages: 283
Product dimensions: 7.01(w) x 10.00(h) x (d)

Table of Contents

Crumple: An Efficient Tool to Explore thoroughly the RNA Folding Landscape.- Secondary Structure Prediction of Single Sequences using RNAstructure.- Prediction of Secondary Structures Conserved in Multiple RNA Sequences.- Predicting RNA-RNA Interactions Using RNAstructure.- A Method to Predict the Structure and Stability of RNA/RNA Complexes.- STarMir Tools for Prediction of microRNA Binding Sites.- Traditional Chemical Mapping of RNA Structure in vitro and in vivo.- High-throughput Nuclease Probing of RNA Structures using FragSeq.- Mapping RNA Structure in vitro with SHAPE Chemistry and Next Generation Sequencing (SHAPE-Seq).- Experiment-assisted Secondary Structure Prediction with RNAstructure.- RNA Secondary Structure Determination by NMR.- Modeling Small Non-canonical RNA Motifs with the Rosetta FARFAR Server.- Automated RNA 3D Structure Prediction with RNAComposer.- RNA 3D Structure Modeling by Combination of Template-Based Method ModeRNA, Template-Free Folding with SimRNA, and Refinement with QRNAS.- Exploring Alternative RNA Structure Sets using MC-FLashfold and db2cm.- NMR Methods for Characterization of RNA Secondary Structure.- The Quick and the Dead: A Guide to Fast Phasing of Small Ribozyme and Riboswitch Crystal Structures.

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