Economic Synthesis of Heterocycles: Zinc, Iron, Copper, Cobalt, Manganese and Nickel Catalysts

by Xiao-Feng Wu, Matthias Beller

Overview

Heterocycle synthesis is one of the largest areas of modern organic chemistry. Heterocycles have a broad range of applications including pharmaceuticals, agrochemicals and dyes, and are the core structure to around 90% of naturally-occurring molecules.

Transition metal catalysts have become favoured in heterocycle synthesis, not least because of their low cost, but also due to their relatively low environmental toxicity and biocompatibility. This book presents an overview of the state-of-the-art in transition metal catalysis for heterocycle synthesis. Each metal is discussed in turn, presenting a comprehensive source of information on the use of zinc, iron, copper, cobalt, manganese, and nickel in a sustainable and economic manner.

Referencing the latest primary literature, and authored by active researchers in the field, this book is a must-have resource for anyone wishing to undertake an economic and sustainable approach to heterocycle synthesis.

Product Details

ISBN-13:	9781849739351
Publisher:	RSC
Publication date:	05/19/2014
Series:	Catalysis Series , #16
Pages:	522
Product dimensions:	6.15(w) x 9.20(h) x (d)

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Economic Synthesis of Heterocycles

Zinc, Iron, Copper, Cobalt, Manganese and Nickel Catalysts

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By Xiao-Feng Wu, Matthias Beller

The Royal Society of Chemistry

Copyright © 2014 Wu and Beller
All rights reserved.
ISBN: 978-1-84973-935-1

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CHAPTER 1

Introduction

Around 90% of naturally occurring molecules have heterocycles as their core structure, and heterocyclics have broad applications in pharmaceuticals, agrochemicals, dyes, and many other areas. With this background, syntheses of heterocyclic compounds have become one of the largest branches of modern organic chemistry. After decades developing experience, numerous synthetic methodologies have been successfully introduced. Among these procedures, methods involving transition metal catalysts constitute a large percentage.

In recent years, sustainable development has been accepted by the wider social community. With the combination of transition metal catalysts and the concept of sustainable development, the use of cheap metal salts as catalysts has attracted the interest of synthetic chemists. Although the catalytic abilities of noble metals in coupling reactions are impressive, as demonstrated by the award of the 2010 Nobel Prize in Chemistry jointly to Richard F. Heck, Ei-ichi Negishi and Akira Suzuki for palladium-catalyzed cross-couplings in organic synthesis, their high cost and toxicity are clear disadvantages.

Of the available cheap metals, zinc (Zn), iron (Fe), copper (Cu), cobalt (Co), manganese (Mn) and nickel (Ni) are representative examples: they are inexpensive, have low toxicity, are biocompatible and are environmentally benign.

Zinc is the 24th most abundant element in the Earth's crust. It was first discovered as a pure metal in 1746 by the German chemist Andreas Sigismund Marggraf by heating a mixture of calamine and carbon in a closed vessel without copper, and this process had become commercially practical by 1752. As a material, the major application of zinc is in the corrosion-resistant zinc plating of steel, with other applications in batteries and alloys. Biologically, zinc is an essential mineral with great biological and public health importance, and it is an essential component of thousands of proteins in plants, although it is toxic in excess. Zinc deficiency may cause many diseases in adults and also lead to growth retardation, delayed sexual maturation, infection susceptibility and diarrhea in children. Chemically, zinc metal has the electron configuration [Ar]3d10 4s2 and is a strong reducing agent. Zinc tends to form bonds with a greater degree of covalency and it forms much more stable complexes with N- and S-donors. Complexes of zinc are mostly 4- or 6-coordinated, but 5-coordinated complexes are also known. The applications of zinc in organic chemistry are mainly used in the preparation of organozinc compounds for organic synthesis, such as the applications of zinc reagents in the Reformatsky reaction, Frankland–Duppa reaction, Negishi reaction, Fukuyama reaction and so on. The application of zinc complexes as catalysts for organic transformations has also been explored, but they are mainly limited by their 'Lewis acid' properties. They are still undeveloped in the area of coupling reactions.

Iron is the fourth most common element in the Earth's crust, with a wide range of oxidation states (-2 to +6). Based on this property, iron catalysts have been widely applied in redox reactions. Concerning cross-coupling reactions, the catalytic abilities of iron catalysts have also been explored, especially the iron-catalyzed cross-coupling of organohalides with Grignard reagents, which have even been applied in the total synthesis of biologically active molecules. Iron is also abundant biologically. Iron-containing proteins are found in all living organisms, ranging from the evolutionarily primitive Archaea to humans. The color of blood is due to hemoglobin, an iron-containing protein.

The catalytic activities of copper salts are more remarkable, even comparable to those of noble metals such as palladium catalysts in cross-coupling reactions. Numerous catalytic systems have been developed for C-O, C-N, C-S and C-C bond formation. Biologically, copper is an essential trace element in plants and animals and copper proteins have diverse roles in biological electron transport and oxygen transportation.

The word 'cobalt' is derived from the German kobalt, from kobold meaning 'goblin,' a superstitious term used for the ore of cobalt by miners. As an element, cobalt has the electron configuration as [Ar]42s3d7 and has oxidation states 2+ and 3+. Cobalt has many applications in a wide range of areas. In materials, cobalt is primarily used as the metal in the preparation of magnetic, wear-resistant and high-strength alloys. In biology, cobalt is the active center of coenzymes called cobalamins, the most common example of which is vitamin B12. As such it is an essential trace dietary mineral for all animals. Cobalt in inorganic form is also an active nutrient for bacteria, algae and fungi. In chemistry, various cobalt compounds are used in chemical reactions as oxidation catalysts. Cobalt acetate is used for the conversion of xylene to terephthalic acid, the precursor to the bulk polymer polyethylene terephthalate. Typical catalysts are the cobalt carboxylates (known as cobalt soaps). They are also used in paints, varnishes and inks as 'drying agents' through the oxidation of drying oils. The same carboxylates are used to improve the adhesion of steel to rubber in steel-belted radial tires. Cobalt-based catalysts are also important in reactions involving carbon monoxide. Steam reforming, useful in hydrogen production, uses cobalt oxide-based catalysts. Cobalt is a catalyst in the Fischer-Tropsch process, used in the hydrogenation of carbon monoxide to give liquid fuels. The hydroformylation of alkenes often relies on cobalt octacarbonyl as the catalyst, although such processes have been partially displaced by more efficient iridium- and rhodium-based catalysts, e.g., in the Cativa process. The hydrodesulfurization of petroleum uses a catalyst derived from cobalt and molybdenum. This process helps to rid petroleum of sulfur impurities that interfere with the refining of liquid fuels.

Manganese is a silvery gray metal that resembles iron. It is hard and very brittle, difficult to fuse, but easy to oxidize. The most common oxidation states of manganese are +2, +3, +4, +6 and +7, although oxidation states from -3 to +7 are observed. In biology, manganese is an essential trace nutrient in all known forms of life. The classes of enzymes that have manganese cofactors are very broad. The reverse transcriptases of many retroviruses (although not lentiviruses such as HIV) contain manganese. There is about 12 mg of manganese present in the human body, which is stored mainly in the bones; in the tissues, it is mostly concentrated in the liver and kidneys. In the human brain, manganese is bound to manganese metalloproteins, most notably glutamine synthetase in astrocytes. Manganese is also important in photosynthetic oxygen evolution in chloroplasts in plants. In chemistry, manganese is mainly used as oxidant for organic substrates. Recently, its catalytic properties have also been explored.

Nickel was first isolated and classified as a chemical element in 1751 by Axel Fredrik Cronstedt, and has two electron configurations, [Ar]4s23d8 and [Ar]4s13d9, with very close energies. From the application point of view, nickel plays important roles in the biology of microorganisms and plants. The plant enzyme urease (an enzyme that assists in the hydrolysis of urea) contains nickel. The [NiFe] hydrogenases contain nickel in addition to iron-sulfur clusters. Such [NiFe] hydrogenases characteristically oxidize H. In synthetic chemistry, nickel catalysts have been explored in carbonylation reactions, coupling reactions and many other types of catalytic transformations. More recently, nickel-catalyzed C–O bond activation has made important achievements and showed superior activity to palladium. In C(sp3)-X transformations, nickel gave excellent activities with boronic acids and organozinc reagents as coupling partner. Nickel catalysts have also been studied in the area of heterocycle synthesis.

With this background, it is extremely interesting and important to develop methodologies that involve Zn, Fe, Cu, Co, Mn and Ni as catalysts in the heterocycle syntheses. In the following chapters, we present detailed discussions on this topic. The chapters are subdivided according to the sizes of the rings formed. The book concludes with a personal outlook.

CHAPTER 2

Zinc-Catalyzed Heterocycle Synthesis

Zinc is elementally essential in our daily lives, with a wide range of applications in materials, and in addition the adult body contains about 2-3 g of elemental zinc. Zinc salts have also been used in plant fertilizers. In organic synthesis, zinc salts are mainly used as Lewis acids. With the accepted importance of heterocyclic compounds and the environmentally benign properties of zinc salts, it is of interest to explore the applications of zinc catalysts in heterocycle syntheses.

2.1 Five-Membered Heterocycles

2.1.1 Zinc-Catalyzed Synthesis of Carbonates

The application of zinc catalysts in the polymerization of epoxides and CO2 has been known for many years, and the alternative production of carbonates from epoxides and CO2 by changing the reaction conditions and using zinc catalyst is also of interest. Carbonates are aprotic polar solvents (and nowadays considered as 'green' solvents) and are used as intermediates for pharmaceuticals and fine chemicals. Various procedures have been developed, and the systems are becoming more well-defined or heterogenized.

Based on previous reports on zinc-catalyzed cyclization and copolymerization of CO2 and peroxides, Kim and colleagues carried out a detailed mechanistic study. A pyridinium alkoxy ion-bridged dimeric zinc complex was isolated and characterized. Subsequently, they carried out a systematic study. The reactions of CO2 and epoxides to produce cyclic carbonates were performed in the presence of a catalyst [L2ZnX2] (L = pyridine or substituted pyridine; X = Cl, Br, I). The effects of pyridine and halide ligands on the catalytic activity and the formation of active species were investigated. Catalysts with electron-donating substituents on the pyridine ligands exhibited higher activity than those with unsubstituted pyridine ligands. On the other hand, catalysts with electron-withdrawing substituents on the pyridine ligands showed no activity; this demonstrates the importance of the nucleophilicity of the pyridine ligands. A zinc complex containing a strongly chelating 2,2'-dipyridyl ligand was found to be totally inactive, indicating that ligand dissociation is also an important factor in the catalysis process. They also prepared a well-defined heterogeneous catalyst by supporting the zinc catalyst on PVP [poly(4vinylpyridine)]. This catalyst shown high selectivity and activity for the reaction of CO2 with ethylene oxide or propylene oxide (Scheme 2.1). Solid NMR characterization of the PVP-supported ZnBr2 catalyst and its reaction product with propylene oxide and/or CO2 showed that a pyridinium alkoxy ion-bridged zinc bromide complex is functioning as an active species, such as in the homogeneous catalysis with L2ZnBr2 (L = pyridine or methyl-substituted pyridine). Since then, they have developed several other procedures, such as imidazolium zinc tetrahalide systems and phosphine-bound zinc halide complexes.

Xia and co-workers found the combination of ZnCl2 and [BMIm]Br (1-butyl-3-methylimidazolium bromine salt) to be an efficient system for the reaction of CO2 with terminal epoxides, and several carbonates were synthesized in good yields (Scheme 2.2). Interestingly, only a trace of product was observed with [BMIm]BF4 and [BMIm]PF6 and low activity with [BMIm]Cl. Later, they immobilized the catalytic system with a biopolymer (chitosan). Under the same reaction conditions, using chitosan-supported zinc chloride, good yields of cyclic carbonates were produced and the catalyst system can be recycled five times without a significant decrease in activity.

Darensbourg and co-workers studied the effects of pyridine derivatives on the reaction of CO2 and cyclohexene oxide. Good to excellent yields (80-91%) of carbonate can be produced with 2,6-dimethoxypyridine, 2-phenylpyridine or 3-trifluoromethylpyridine as ligand and with ZnBr2, ZnI2 or ZnCl2 as the catalyst. Zinc(II) benzoate complexes for the reaction of carbon dioxide with epoxide were also studied. Good activities were found under 41.3 bar of CO2 at 80 °C. Additionally, catalytic systems based on ZnBr2/n-Bu4NI15, ZnBr2/Ph4PI, Zn/ionic liquid, Zn/SiO2 and Zn/hydroxyapatite were developed. A highly active homogeneous system based on Zn(salphen) was established recently. In combination with Bu4NI, under solvent-free conditions, excellent conversion and selectivity towards cyclic carbonate product can be obtained (Scheme 2.3).

In addition to the reaction of epoxides with CO2, carbonates can also be produced from 1,2-propylene glycol and urea. By using ZnO as catalyst supported on NaY, propylene carbonate was produced in good yield.

2.1.2 Zinc-Catalyzed Synthesis of Tetrazoles

Tetrazoles are a class of heterocycles with a wide range of pharmaceutical and industrial activities. The most straightforward reaction pathway is the addition of azide ion to nitriles. In 2001, Demko and Sharpless reported the first example of the zinc bromide-mediated reaction of sodium azide with nitriles in water. The reaction showed a broad substrates scope and functional group tolerance. A variety of aromatic nitriles, activated and unactivated alkyl nitriles, substituted vinyl nitriles, thiocyanates and cyanamides were converted into the corresponding tetrazoles in good to excellent yields (Scheme 2.4). Considering the recognized importance of the tetrazole moiety in peptidomimetic chemistry, they succeeded in extending their methodology to α-aminonitriles by slightly changing the reaction conditions. Tetrazole analogs of α-amino acids were prepared in good yields by refluxing the starting materials in water-2-propanol at 80 °C (Scheme 2.5a). It was later demonstrated that this reaction can be performed under solvent-free conditions. Based on density functional theory (DFT) calculations, the coordination of the nitrile to the zinc ion is the dominant factor affecting the catalysis, which substantially lowers the barrier for nucleophilic attack by azide. Interestingly, the tetrazole can be fragmented into the corresponding triazoles with the assistance of Zn(OTf)2 and under microwave irradiation (Scheme 2.5b). BF3 OEt2, Al(OTf)3, AgOTf, Cu(OTf)2, In (OTf)3 and ZnCl2 were also tested as Lewis acids, and lower yields of triazole were observed; no product was formed with FeCl3 as catalyst.

In 2007, Bolm's group extended this methodology to the synthesis of N(1H)-tetrazole sulfoximines (Scheme 2.6). In the presence of NaN3 and ZnBr2, various N-cyano compounds which were prepared from readily available sulfides and cyanogen amine or by direct cyanation of the corresponding N-(H)-sulfoximine were transformed. This reaction is stereospecific, allowing easy access to novel enantiopure sulfoximines from the corresponding optically active N-cyano derivatives. The transformation of these compounds into N-benzylated tetrazoles and 5-substituted 1,3,4-oxadiazole sulfoximines was also accomplished. Later, arylaminotetrazoles were prepared from arylcyanamides under similar reaction conditions. Generally, isomers of 5-arylamino-1H-tetrazole can be obtained from arylcyanamides carrying an electron-withdrawing substituent on the aryl ring and, as the electropositivity of substituent was increased, the product was shifted toward the isomer of 1-aryl-5-amino-1H-tetrazole. Since the first report from Sharpless, several heterogeneous zinc catalysts were developed and applied in the reaction of nitriles with azides. The typical catalysts included, ZnO, ZnS and others. One main advantage of these methodologies is the reusability of the catalysts, but a high reaction temperature was still needed and the reactions should be carried out in an organic solvent.

Wu and co-workers reported a domino reaction of 2alkynylbenzonitriles with sodium azide. Under microwave irradiation (75 W), treatment of 2-alkynylbenzonitriles with 1.5 equiv. of sodium azide in DMSO at 140 °C gave 4,5-disubstituted-2H-1,2,3-triazoles in 60-99% yields. Additionally, adding 8 equiv. of ZnBr2 and using 8 equiv. of sodium azide in DMF at 100 °C led to the formation of tetrazolo[5,1-a]isoquinolines in yields of up to 87% (Scheme 2.7).

(Continues...)

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Table of Contents

Preface;
Introduction;
Zinc-Catalyzed Heterocycles Synthesis;
Iron-Catalyzed Heterocycles Synthesis;
Copper-Catalyzed Heterocycles Synthesis;
Cobalt-Catalyzed Heterocycles Synthesis;
Manganese-Catalyzed Heterocycles Synthesis;
Nickel-Catalyzed Heterocycles Synthesis;
Outlook;