Table of Contents
Analysis of Combinatorial Gene Regulation with Thermodynamic Models
Chieh-Chun Chen and Sheng Zhong
RNA Secondary Structure Prediction and Gene Regulation by Small RNAs
Ye Ding
Some Critical Data Quality Control Issues of Oligoarrays
Wenjiang J. Fu, Ming Li, Yalu Wen and Likit Preeyanon
Shastic-process Approach to Nonequilibrium Thermodynamics and Biological Signal Transduction
Hao Ge
Granger Causality: Theory and Applications
Shuixia Guo, Christophe Ladroue and Jianfeng Feng
Transcription Factor Binding Site Identification by Phylogenetic Footprinting
Haiyan Hu and Xiaoman Li
Learning Network from High-dimensional Array Data
Li Hsu, Jie Peng and Pei Wang
Computational Methods for Predicting Domain-Domain Interactions
Hyunju Lee, Ting Chen and Fengzhu Sun
Irreversible Shastic Processes, Coupled Diffusions and Systems Biochemistry
Pei-Zhe Shi and Hong Qian
Probability Modeling and Statistical Inference in Periodic Cancer Screening
Dongfeng Wu and Gary L. Rosner
On Construction of the Smallest One-sided Confidence Intervals and its Application in Identifying the Minimum Effective Dose
Weizhen Wang
Group Variable Selection Methods and Their Applications in Analysis of Genomic Data
Jun Xie and Lingmin Zeng
Modeling Protein-Signaling Networks with Granger Causality Test
Wenqiang Yang and Qiang Luo
DNA Copy Number Profiling in Normal and Tumor Genomes
Nancy R. Zhang
Spatial Disease Surveillance: Methods and Applications
Tonglin Zhang
From QTL Mapping to eQTL Analysis
Wei Zhang and Jun S Liu
An Evaluation of Gene Module Concepts in the Interpretation of Gene Expression Data
Xianghua Zhang and Hongyu Zhao
Readout of Spike Waves in a Microcolumn
Xuejuan Zhang
False Positive Control for Genome-wide ChIP-chip Tiling Arrays
Yu Zhang
