Appleseed, Book 2: Prometheus Unbound by Shirow Masamune
You can't have a perfect society without perfect people, and the only perfect people are the ones you can manufacture. The governing body of Olympus, an urban utopia created from the ashes of World War III, is about to bring paradise crashing down around their ears as they seek to regulate the minds and bodies of the human race... or fully replace them with cyborg substitutes. Deunan and Briareos, still new to the city, find themselves in the unlikely position of having to hold together this house of cards. Their strategy? Destroy the old foundation and pray everything stands while new underpinnings are forged!